This lesson is still being designed and assembled (Pre-Alpha version)

Introduction to data management and eco-evo process modeling for multidimensional biodiversity data

Key Points

Starting a Metagenomics Project
  • Shotgun metagenomics can be used for taxonomic and functional studies.

  • Metabarcoding can be used for taxonomic studies.

  • Collecting metadata beforehand is fundamental for downstream analysis.

  • We will use data from a Cuatro Ciénegas project to learn about shotgun metagenomics.

Assessing Read Quality
  • Quality encodings vary across sequencing platforms.

  • for loops let you perform the same set of operations on multiple files with a single command.

  • It is important to know the quality of our data to be able to make decisions in the subsequent steps.